Computer Graphics environment in Matlab @(515.1 Computer Graphics)[matlab] Recently, we are using matlab to do computer vision experiments. Thus this note introduces some function controlling the elementary graphics environment. For Computer Graphics, the basic 3 components are
Multi-platform Matlab compiling When trying to compile a matlab code, I faced and solved many errors either on the Windows platform and the MacOS platform. Here I note some prominent difference across platform and how to debug the compiling process.
Installation Official note on installation https://caffe.berkeleyvision.org/installation.html Installing CPU version on CHPC Install Miniconda Install caffe using condaconda install -c intel caffe lsb_release -d Description: CentOS release 6.10 (Final) Building GPU version on CHPC (Not succeeded yet…. aborted)
Using Google Cloud Service for Large Scale Image Labelling Installing Google SDK https://cloud.google.com/sdk/docs/quickstart-windows New a Google Cloud Platform Project Download Google Cloud SDK After installation run gcloud init and log in to your account there! Select the GCP Project and the computing zone Finish the SDK configuration! Installing Google API for different programs (like Vision we use) https://cloud.google.com/python/
How to Parse Latin/Greek Anatomical/Physiological Terms TOC {:toc} 大部分现代医学 解剖术语似乎是文艺复兴之后生理学家创造的，但为了显得高端，使用当时的国际学术语言Latin书写。因为当时Latin在当时早已不是日常语言，所以大多是科学家们非常规整的用Classic Latin/Greek 的词根Root 词缀Pre-/Suffix 变位法Conjugation，人工构词产生的，算New Latin。所以知道了词根之后拼写起来单词就会像写中文组词一样，记忆起来也容易1，也更容易根据词形记忆解剖结构的位置。 词根 单个词大多是由词根词缀组合而成 比如 肋骨rib= costa costae(单数形容词) costarum(复数形容词) 腹股沟groin= Ilium Ilio(变位形式) 合在一起成了Iliocostalis 髂肋肌 Wikipedia List of medical roots, suffixes and prefixes
TOC {:toc} Python is a script language. Most of the packages are written in python, and they are just a bunch of script files in a folder hierachy. For these packages, it’s just as easy as find the script file and run them.
TOC {:toc} Objective Build the software environment for Scientific Computing Data Analysis and Deep Learning for a GPU enabled Linux work station. This post majorly summarizes the tools and references for building up a Linux Working Environment. I’ll update the errors and trouble shooting notes as I encounter them.
DeepLabCut Trouble Shooting @(Ponce Lab) TOC {:toc} Install DLC Windows machine, follow the steps in install tutorial to establish the whole conda environment in the machine. Fail at first step Many of us just fail at first step, some error message like
Motivation Although there are a millennium of methods for neural and behavioral signal recording, the questions asked about the neural data is ususally less diverse. Ultimately, everything is number and we process numbers with algorithm.
Larval zebrafish is a tiny vertebrate, really suitable for circuit study, as its translucency. Gross Anatomy Data Zebrafish brain explorer @ Harold Burgess Lab Cell Type Data Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq Standard Brain